PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596209.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 265aa    MW: 29040.7 Da    PI: 7.7686
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding635.9e-201358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_013596209.1 13 KGPWSPEEDDLLQKLVEKHGPKNWSLISKSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP

2Myb_DNA-binding52.41.2e-1668109447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++eEde +v+a++++G++ W+t++r +  gRt++ +k++w++ 
   XP_013596209.1  68 FSPEEDEMIVRAHARYGNK-WATVSRLLS-GRTDNAVKNHWNST 109
                      89*****************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.549863IPR017930Myb domain
SuperFamilySSF466892.28E-3110106IPR009057Homeodomain-like
SMARTSM007173.0E-181261IPR001005SANT/Myb domain
PfamPF002496.2E-201358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-261466IPR009057Homeodomain-like
CDDcd001671.71E-171557No hitNo description
SMARTSM007171.4E-1364112IPR001005SANT/Myb domain
PROSITE profilePS5129419.03365114IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2167113IPR009057Homeodomain-like
CDDcd001672.67E-1168110No hitNo description
PfamPF002491.3E-1368109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSGPTRKNME RIKGPWSPEE DDLLQKLVEK HGPKNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRGFSP EEDEMIVRAH ARYGNKWATV SRLLSGRTDN AVKNHWNSTL KRKCTPEGHD  120
GNLGEEQPSK RAASGGVCTG LYMSPGSPAG SDVSASDGGD PPTYLSLSLP WNNGCDTETV  180
GINGDTVIDG GYTAELFPVR KKEERGIVGG EFMTAVQEMV RTEVRSYMAE LQRGNVGGGL  240
CIPQSVNSCR VGFREFIVNQ IGKME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-40101141105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667421e-104KC966742.1 Brassica napus MYB transcription factor 73 (MYB73.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596209.10.0PREDICTED: transcription factor MYB44-like
SwissprotQ9FDW15e-81MYB44_ARATH; Transcription factor MYB44
TrEMBLA0A0D3DI470.0A0A0D3DI47_BRAOL; Uncharacterized protein
STRINGBra017813.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-143myb domain protein 73